Stem-loop bmo-mir-2733d

Accession

MI0012305

Description

Bombyx mori bmo-mir-2733d precursor miRNA

Literature search

1 open access papers mention bmo-mir-2733d
(4 sentences)

Sequence

708559 reads, 5816.0 reads per million, 26 experiments

cucucuguaaugcAGUCAUCAUACUCACAGUUGAUAuguuugacauucuaUCACUGGGUGUAUGAAGAUUGUgguacagaga
.((((((((.(((((((.((((((.(.((((.(((((((...)))...)))))))).).)))))).))))))).))))))))

Structure

c        a       A      U A    U    ---   u 
 ucucugua ugcAGUC UCAUAC C CAGU GAUA   ugu  
 |||||||| ||||||| |||||| | |||| ||||   ||| u
 agagacau gUGUUAG AGUAUG G GUCA CUau   aca  
-        g       A      U G    -    cuu   g 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 367686-367767 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from bmo-mir-2733d

Mature bmo-miR-2733d-5p

• Accession: MIMAT0053153
• Description: Bombyx mori bmo-miR-2733d-5p mature miRNA
• Sequence: 14 - AGUCAUCAUACUCACAGUUGAUA - 36
• Evidence: experimental ; Illumina [1-2]

Mature bmo-miR-2733d-3p

• Accession: MIMAT0013618
• Description: Bombyx mori bmo-miR-2733d-3p mature miRNA
• Sequence: 51 - UCACUGGGUGUAUGAAGAUUGU - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52