Stem-loop bmo-mir-2733c

Accession

MI0012306

Description

Bombyx mori bmo-mir-2733c precursor miRNA

Literature search

2 open access papers mention bmo-mir-2733c
(5 sentences)

Sequence

145561 reads, 1375.0 reads per million, 29 experiments

gauugucacugucAGUUGUCACUAUCGCCAGUGUCagugucguaauucugUCACUGGGAGAGUGAUGAUUGCcggugacgau
.((((((((((.(((((((((((.((.((((((.(((.((....)).))).)))))))).))))))))))).))))))))))

Structure

g          u           A  G      U   u  c 
 auugucacug cAGUUGUCACU UC CCAGUG Cag gu g
 |||||||||| ||||||||||| || |||||| ||| ||  
 uagcaguggc GUUAGUAGUGA AG GGUCAC guc ua u
-          C           G  -      U   u  a 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 375823-375904 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from bmo-mir-2733c

Mature bmo-miR-2733c-5p

• Accession: MIMAT0053154
• Description: Bombyx mori bmo-miR-2733c-5p mature miRNA
• Sequence: 14 - AGUUGUCACUAUCGCCAGUGUC - 35
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2733c-3p

• Accession: MIMAT0013619
• Description: Bombyx mori bmo-miR-2733c-3p mature miRNA
• Sequence: 51 - UCACUGGGAGAGUGAUGAUUGC - 72
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415