Stem-loop bmo-mir-9d

Accession

MI0012307

Description

Bombyx mori bmo-mir-9d precursor miRNA

Literature search

5 open access papers mention bmo-mir-9d
(10 sentences)

Sequence

20287 reads, 538.0 reads per million, 12 experiments

gcucaauuggaguAUUUGGUGAUUCAGCUGAUGUGAugaaaacuuuuuaauucAUAAAGCUAAUUCACUGAGUGUucgaguugag
.(((((((.(((((((((((((...((((..((((((((((...)))))..))))).))))...))))))))))))).)))))))

Structure

g       g             UUC    GA     --     a 
 cucaauu gaguAUUUGGUGA   AGCU  UGUGA  ugaaa  
 ||||||| |||||||||||||   ||||  |||||  ||||| c
 gaguuga cuUGUGAGUCACU   UCGA  AUAcu  auuuu  
-       g             UAA    -A     ua     u 

Annotation confidence High

Genome context

dbj|BSVE01000011.1|: 376658-376742 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from bmo-mir-9d

Mature bmo-miR-9d-5p

• Accession: MIMAT0053155
• Description: Bombyx mori bmo-miR-9d-5p mature miRNA
• Sequence: 14 - AUUUGGUGAUUCAGCUGAUGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-9d-3p

• Accession: MIMAT0013620
• Description: Bombyx mori bmo-miR-9d-3p mature miRNA
• Sequence: 54 - AUAAAGCUAAUUCACUGAGUGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148