Stem-loop bmo-mir-375

Accession

MI0012324

Description

Bombyx mori bmo-mir-375 precursor miRNA

Literature search

1 open access papers mention bmo-mir-375
(2 sentences)

Sequence

17095 reads, 3472 reads per million, 3 experiments

cagcaaggcgACCCGAGCGGUCUGAGCAAACUgugacaauaucuagUUUGUUCGCCCCGGCUCGUGUCGccaagcguca
..((..((((((.(((((((..(((((((((((.((.....)))))))))))))..)).))))).))))))..))....

Structure

--ca  aa      C     -  UC           u  c 
    gc  ggcgAC CGAGC GG  UGAGCAAACUg ga a
    ||  |||||| ||||| ||  ||||||||||| || a
    cg  ccGCUG GCUCG CC  GCUUGUUUgau cu u
acug  aa      U     G  CC           -  a 

Annotation confidence Medium

Genome context

NW_004581700.1: 2059423-2059501 [+]

Mature bmo-miR-375-5p

• Accession: MIMAT0013648
• Description: Bombyx mori bmo-miR-375-5p mature miRNA
• Sequence: 11 - ACCCGAGCGGUCUGAGCAAACU - 32
• Evidence: experimental ; Illumina [1-2], SOLID [3]

Mature bmo-miR-375-3p

• Accession: MIMAT0013649
• Description: Bombyx mori bmo-miR-375-3p mature miRNA
• Sequence: 47 - UUUGUUCGCCCCGGCUCGUGUCG - 69
• Evidence: experimental ; Illumina [1-2], SOLID [3]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415


3. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52