Stem-loop bmo-mir-2778d

Accession

MI0012349

Description

Bombyx mori bmo-mir-2778d precursor miRNA

Sequence

1606 reads, 290 reads per million, 3 experiments

cacggcaaaaGUUUUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUACGCAAAAAACAAUUuugacgugag
((((.(((((..((((((((.(((.((((..((........)).)))).))).))))))))...))))).))))..

Structure

--    g     -GU        A   C    Ac  uuu 
  cacg caaaa   UUUUUUGC UAU CUGC  ag   c
  |||| |||||   |||||||| ||| ||||  ||    
  gugc guuUU   AAAAAACG AUG GACg  uc   a
ga    a     AAC        C   A    -c  uug 

Annotation confidence High

Genome context

NW_004617724.1: 662-737 [+]

Mature bmo-miR-2778d-5p

• Accession: MIMAT0013673
• Description: Bombyx mori bmo-miR-2778d-5p mature miRNA
• Sequence: 11 - GUUUUUUUGCAUAUCCUGCA - 30
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2778d-3p

• Accession: MIMAT0013674
• Description: Bombyx mori bmo-miR-2778d-3p mature miRNA
• Sequence: 46 - CAGAGUACGCAAAAAACAAUU - 66
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415