Stem-loop bmo-mir-2778b

Accession

MI0012351

Description

Bombyx mori bmo-mir-2778b precursor miRNA

Sequence

2727 reads, 485 reads per million, 3 experiments

cacggcaaaaGUUUUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUAGGCAAAAAAACAAUUuugacgugag
((((.(((((((((((((((.(((.((((..((........)).)))).))).))))))))))..))))).))))..

Structure

--    g     --          A   C    Ac  uuu 
  cacg caaaa  GUUUUUUUGC UAU CUGC  ag   c
  |||| |||||  |||||||||| ||| ||||  ||    
  gugc guuUU  CAAAAAAACG AUG GACg  uc   a
ga    a     AA          G   A    -c  uug 

Annotation confidence Medium

Genome context

NW_004607897.1: 218-294 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-2778b

Mature bmo-miR-2778b-5p

• Accession: MIMAT0013675
• Description: Bombyx mori bmo-miR-2778b-5p mature miRNA
• Sequence: 11 - GUUUUUUUGCAUAUCCUGCA - 30
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2778b-3p

• Accession: MIMAT0013676
• Description: Bombyx mori bmo-miR-2778b-3p mature miRNA
• Sequence: 46 - CAGAGUAGGCAAAAAAACAAUU - 67
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415