miRBase entry: bmo-mir-2797a

Stem-loop bmo-mir-2797a


Accession
MI0012370
Description
Bombyx mori bmo-mir-2797a precursor miRNA


Sequence

6 reads, 3 reads per million, 1 experiments
uguugugaucAUAAGUAGGUUUUAUUCGACUUuguucuauauucaagucgcgugaauccuacuuuugaugacugcga
(((.((.((((.(((((((.(((((.((((((.(........).)))))).))))).))))))).)))).)).))).

Structure
-   u  g    U       U     U      u uuc 
 ugu gu aucA AAGUAGG UUUAU CGACUU g   u
 ||| || |||| ||||||| ||||| |||||| |    
 gcg ca uagu uucaucc aagug gcugaa u   a
a   u  g    u       u     c      c uau 


Annotation confidence Not enough data
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Genome context
NW_004581747.1: 1275167-1275243 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2797a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2797a

Accession MIMAT0013698
Description Bombyx mori bmo-miR-2797a mature miRNA
Sequence 11 - AUAAGUAGGUUUUAUUCGACUU - 32
Evidence experimental
Illumina [1], SOLID [2]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415