miRBase entry: bmo-mir-2797c

Stem-loop bmo-mir-2797c


Accession
MI0012372
Description
Bombyx mori bmo-mir-2797c precursor miRNA


Sequence

9063 reads, 131.0 reads per million, 23 experiments
uaugauuaacAUAAGUAGGUUUUAUUCAGUUUguguuucauucaaaCCGUAUAAACCCUACUUUUGCugaugauaa
(((.((((.((.(((((((.(((((.(.(((((.........))))).).))))).))))))).)).)))).))).

Structure
-   g    a  U       U     U A     ugu 
 uau auua cA AAGUAGG UUUAU C GUUUg   u
 ||| |||| || ||||||| ||||| | |||||   u
 aua uagu GU UUCAUCC AAAUA G Caaac   c
a   g    C  U       C     U C     uua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
dbj|BSVE01000027.1|: 11554192-11554267 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2797c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2797c-5p

Accession MIMAT0013700
Description Bombyx mori bmo-miR-2797c-5p mature miRNA
Sequence 11 - AUAAGUAGGUUUUAUUCAGUUU - 32
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-2797c-3p

Accession MIMAT0053170
Description Bombyx mori bmo-miR-2797c-3p mature miRNA
Sequence 47 - CCGUAUAAACCCUACUUUUGC - 67
Evidence experimental
Illumina [1], SOLID [2]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415