Stem-loop bmo-mir-2797d

Accession

MI0012373

Description

Bombyx mori bmo-mir-2797d precursor miRNA

Sequence

1406 reads, 19.0 reads per million, 24 experiments

ugucguguuuAUAAGUAGACAUUGUCCGGCUUguuguucaucaagUCGAACAUAAUCUGCUUACAAccgugacgagaugcagugcgcggcg
...........((((((((...(((.(((((((........))))))).)))...))))))))...(((((((........)).)))))..

Structure

-----------------ugucguguuuA        CAU   C       uug 
                            UAAGUAGA   UGU CGGCUUg   u
                            ||||||||   ||| |||||||    
                            AUUCGUCU   ACA GCUgaac   u
gcggcgcgugacguagagcagugccAAC        AAU   A       uac 

Annotation confidence High

Genome context

dbj|BSVE01000027.1|: 11554393-11554483 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-2797d

Mature bmo-miR-2797d-5p

• Accession: MIMAT0013701
• Description: Bombyx mori bmo-miR-2797d-5p mature miRNA
• Sequence: 11 - AUAAGUAGACAUUGUCCGGCUU - 32
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-2797d-3p

• Accession: MIMAT0053171
• Description: Bombyx mori bmo-miR-2797d-3p mature miRNA
• Sequence: 46 - UCGAACAUAAUCUGCUUACAA - 66
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415