miRBase entry: bmo-mir-2812

Stem-loop bmo-mir-2812


Accession
MI0012393
Description
Bombyx mori bmo-mir-2812 precursor miRNA


Sequence

169 reads, 4.0 reads per million, 26 experiments
cccuggcccugUCAGAAUCGAGUUACUACAGCCUggacgagauuaugggccgcaccgucCAGGCUGUAAUAGAAAGGCUgagugccggg
.((((((....((((..((...(((.(((((((((((((................))))))))))))).)))...))))))..))))))

Structure
c      ccug    AA  GAG   C             agauuau 
 ccuggc    UCAG  UC   UUA UACAGCCUggacg       g
 ||||||    ||||  ||   ||| |||||||||||||        
 gggccg    agUC  GG   GAU AUGUCGGACcugc       g
-      --ug    --  AAA   A             cacgccg 


Annotation confidence Medium
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Genome context
dbj|BSVE01000014.1|: 10513321-10513409 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2812
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2812-5p

Accession MIMAT0053185
Description Bombyx mori bmo-miR-2812-5p mature miRNA
Sequence 12 - UCAGAAUCGAGUUACUACAGCCU - 34
Evidence experimental
Illumina [1]

Mature bmo-miR-2812-3p

Accession MIMAT0013720
Description Bombyx mori bmo-miR-2812-3p mature miRNA
Sequence 60 - CAGGCUGUAAUAGAAAGGCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148