We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
Want the script? Email us or visit Downloads or something.
ca - cUGGUACUGUGCCAGAAAU AUCGU aa c --a u - g
cg agag UGG CCugug gc g ga gu caug c
|| |||| ||| |||||| || | || || |||| c
gc ucUC ACC GGACAC CG C CU CA gugc a
ua g ------------------- --AAU -- C AAA U A g