miRBase entry: bmo-mir-2833-2

Stem-loop bmo-mir-2833-2


Accession
MI0012453
Description
Bombyx mori bmo-mir-2833-2 precursor miRNA


Sequence

868 reads, 21.0 reads per million, 31 experiments
aagaaUUCGCGGUAAACAGUGGAAAcugguccucauauguugAGAGAUUGGAAAUGUACUUUUUGgugaauaaau
....((((((.(.(((.((((.(..((((((((((.....)))).))))))...).)))))))).))))))....

Structure
aaga      G U   C    G -AA      -    u 
    aUUCGC G AAA AGUG A   cugguc cuca a
    |||||| | ||| |||| |   |||||| |||| u
    uaagug U UUU UCAU U   GGUUAG GAgu g
uaaa      G -   -    G AAA      A    u 


Annotation confidence Medium
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Genome context
dbj|BSVE01000009.1|: 5420246-5420320 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2833-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2833-5p

Accession MIMAT0053197
Description Bombyx mori bmo-miR-2833-5p mature miRNA
Sequence 6 - UUCGCGGUAAACAGUGGAAA - 25
Evidence experimental
Illumina [1]

Mature bmo-miR-2833-3p

Accession MIMAT0013747
Description Bombyx mori bmo-miR-2833-3p mature miRNA
Sequence 43 - AGAGAUUGGAAAUGUACUUUUUG - 65
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148