Stem-loop bmo-mir-2780d

Accession

MI0012462

Description

Bombyx mori bmo-mir-2780d precursor miRNA

Sequence

23131 reads, 499.0 reads per million, 34 experiments

accacggugaAAAGGUGUUAAAUGAAGACUUAGggcuucgagcauaucgaagAAAAACAGGACAUCGUUUGAAUGCUcgucuaaugga
.(((....((..((...((((((((.(.(((....((((((.....))))))......))).).))))))))...))..))...))).

Structure

a   cggu  AA  GUG        A A   --AGgg      g 
 cca    ga  AG   UUAAAUGA G CUU      cuucga c
 |||    ||  ||   |||||||| | |||      |||||| a
 ggu    cu  UC   AGUUUGCU C GGA      gaagcu u
a   -aau  gc  GUA        A A   CAAAAA      a 

Annotation confidence Medium

Genome context

dbj|BSVE01000025.1|: 2723410-2723497 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-2780d

Mature bmo-miR-2780d-5p

• Accession: MIMAT0013765
• Description: Bombyx mori bmo-miR-2780d-5p mature miRNA
• Sequence: 11 - AAAGGUGUUAAAUGAAGACUUAG - 33
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-2780d-3p

• Accession: MIMAT0053205
• Description: Bombyx mori bmo-miR-2780d-3p mature miRNA
• Sequence: 53 - AAAAACAGGACAUCGUUUGAAUGCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148