Stem-loop hvt-mir-H7

Accession

MI0012478

Description

Herpesvirus of turkeys hvt-mir-H7 precursor miRNA

Sequence

gccuaucaUUUUUCCUAAAGCGUGCCCGGGUUAugcuuuagucaaACCGGUCCGUUGUAGGAAUUAGGAAaggc
((((.((....((((((.((((.(.((((.................)))).))))).))))))....)).))))

Structure

    a  aUUU      A    U C    GUUAugc 
gccu uc    UUCCUA AGCG G CCGG       u
|||| ||    |||||| |||| | ||||       u
cgga AG    AAGGAU UUGC C GGCC       u
    A  GAUU      G    - U    Aaacuga 

Annotation confidence Not enough data

Comments

Yao et al. named this sequence hvt-mir-1 in [2].

Genome context

Unknown

Mature hvt-miR-H7-5p

• Accession: MIMAT0012718
• Description: Herpesvirus of turkeys hvt-miR-H7-5p mature miRNA
• Sequence: 9 - UUUUUCCUAAAGCGUGCCCGGGUUA - 33
• Evidence: experimental ; Illumina [1], Northern [2]

Mature hvt-miR-H7-3p

• Accession: MIMAT0012719
• Description: Herpesvirus of turkeys hvt-miR-H7-3p mature miRNA
• Sequence: 46 - ACCGGUCCGUUGUAGGAAUUAGGAA - 70
• Evidence: experimental ; Illumina [1], cloned [2]

References

1. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136


2. PubMed ID: 19403687
   Novel microRNAs (miRNAs) encoded by herpesvirus of Turkeys: evidence of miRNA evolution by duplication
   "Yao Y, Zhao Y, Smith LP, Watson M, Nair V"
   "J Virol (2009) 83:6969-6973