Stem-loop hvt-mir-H9

Accession

MI0012480

Description

Herpesvirus of turkeys hvt-mir-H9 precursor miRNA

Sequence

gcauacUUUCUCAUGGACCCCCGAGUUGUGUcuauucguuaaCAGCUAGGCCGUCCAUGAGGUCGUAggc
((.(((..((((((((((..((.((((((............)))))).))..))))))))))..))).))

Structure

  a   UU          CC  G      GUcua 
gc uac  UCUCAUGGAC  CC AGUUGU     u
|| |||  ||||||||||  || ||||||      
cg AUG  GGAGUACCUG  GG UCGACa     u
  g   CU          CC  A      auugc 

Annotation confidence Not enough data

Comments

Yao et al. named this sequence hvt-mir-2 in [2].

Genome context

Unknown

Mature hvt-miR-H9-5p

• Accession: MIMAT0012721
• Description: Herpesvirus of turkeys hvt-miR-H9-5p mature miRNA
• Sequence: 7 - UUUCUCAUGGACCCCCGAGUUGUGU - 31
• Evidence: experimental ; Illumina [1], cloned [2]

Mature hvt-miR-H9-3p

• Accession: MIMAT0012722
• Description: Herpesvirus of turkeys hvt-miR-H9-3p mature miRNA
• Sequence: 43 - CAGCUAGGCCGUCCAUGAGGUCGUA - 67
• Evidence: experimental ; Illumina [1], cloned [2]

References

1. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136


2. PubMed ID: 19403687
   Novel microRNAs (miRNAs) encoded by herpesvirus of Turkeys: evidence of miRNA evolution by duplication
   "Yao Y, Zhao Y, Smith LP, Watson M, Nair V"
   "J Virol (2009) 83:6969-6973