Stem-loop mdo-mir-153-2

Accession

MI0012494

Description

Monodelphis domestica mdo-mir-153-2 precursor miRNA

Sequence

12417 reads, 184 reads per million, 5 experiments

agcgguugccggugUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacugug
.((((((.(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).)))))).

Structure

a      g      -             GU       -a  aa 
 gcgguu ccggug UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g      a      U             AU       cc  ag 

Annotation confidence Medium

Genome context

chr8: 224496550-224496636 [-]

Mature mdo-miR-153-3p

• Accession: MIMAT0012738
• Description: Monodelphis domestica mdo-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGAUC - 74
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-153-2-5p

• Accession: MIMAT0026931
• Description: Monodelphis domestica mdo-miR-153-2-5p mature miRNA
• Sequence: 15 - UCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45