Stem-loop mdo-mir-190a

Accession

MI0012496

Description

Monodelphis domestica mdo-mir-190a precursor miRNA

Sequence

12466 reads, 199 reads per million, 5 experiments

ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaaCUAUAUAUCAAACAUAUUCCUacaguguccugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure

u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cgucc g gacaU  UUAUACAAACUAUAUA  UCaac    u
c     u u     CC                --     cuaa 

Annotation confidence Medium

Genome context

chr1: 147980881-147980965 [+]

Mature mdo-miR-190a-5p

• Accession: MIMAT0012740
• Description: Monodelphis domestica mdo-miR-190a-5p mature miRNA
• Sequence: 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-190a-3p

• Accession: MIMAT0026933
• Description: Monodelphis domestica mdo-miR-190a-3p mature miRNA
• Sequence: 52 - CUAUAUAUCAAACAUAUUCCU - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45