Stem-loop mdo-mir-139

Accession

MI0012500

Description

Monodelphis domestica mdo-mir-139 precursor miRNA

Sequence

8063 reads, 120 reads per million, 5 experiments

uguauUCUACAGUGCAUGUGUCUccagugugacuaagggacUGGAGAUACAGCCCUGUUGGAAUaacaa
((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).

Structure

-   -      -   U  A            g ga 
 ugu auUCUA CAG GC UGUGUCUccagu u  c
 ||| |||||| ||| || |||||||||||| |  u
 aca UAAGGU GUC CG ACAUAGAGGUca g  a
a   a      U   C  -            g ga 

Annotation confidence Medium

Genome context

chr4: 347282326-347282394 [+]

Mature mdo-miR-139-5p

• Accession: MIMAT0012744
• Description: Monodelphis domestica mdo-miR-139-5p mature miRNA
• Sequence: 6 - UCUACAGUGCAUGUGUCU - 23
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-139-3p

• Accession: MIMAT0026936
• Description: Monodelphis domestica mdo-miR-139-3p mature miRNA
• Sequence: 42 - UGGAGAUACAGCCCUGUUGGAAU - 64
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45