Stem-loop mdo-mir-140

Accession

MI0012501

Description

Monodelphis domestica mdo-mir-140 precursor miRNA

Sequence

122551 reads, 2133 reads per million, 5 experiments

ccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGAcagg
((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).))))

Structure

    -  A             A       u  c  c 
ccug cC GUGGUUUUACCCU UGGUAGg ua gu  
|||| || ||||||||||||| ||||||| || || a
ggac GG CACCAAGAUGGGA ACCAUcu gu cg  
    A  -             C       u  -  u 

Annotation confidence Medium

Genome context

chr1: 699870957-699871026 [+]

Mature mdo-miR-140-5p

• Accession: MIMAT0012745
• Description: Monodelphis domestica mdo-miR-140-5p mature miRNA
• Sequence: 6 - CAGUGGUUUUACCCUAUGGUAG - 27
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-140-3p

• Accession: MIMAT0026937
• Description: Monodelphis domestica mdo-miR-140-3p mature miRNA
• Sequence: 45 - UACCACAGGGUAGAACCACGGA - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45