Stem-loop mdo-mir-146a

Accession

MI0012502

Description

Monodelphis domestica mdo-mir-146a precursor miRNA

Sequence

7356 reads, 127 reads per million, 5 experiments

uguaucuucagcuuUGAGAACUGAAUUCCAUGGGUUgucuuuguaucagaCCUAUGAAACUCAGUUCUUCAGcuggaauaucucugucauc
.((((.(((((((..(((((((((.((.((((((((............)))))))).)).))))))))).)))))))))))..........

Structure

---------u    c       uU         A  C        gucuu 
          guau uucagcu  GAGAACUGA UU CAUGGGUU     u
          |||| |||||||  ||||||||| || ||||||||      
          uaua aggucGA  UUCUUGACU AA GUAUCCag     g
cuacugucuc    -       -C         C  A        acuau 

Annotation confidence Low

Genome context

chr1: 356034884-356034974 [+]

Mature mdo-miR-146a-5p

• Accession: MIMAT0012746
• Description: Monodelphis domestica mdo-miR-146a-5p mature miRNA
• Sequence: 15 - UGAGAACUGAAUUCCAUGGGUU - 36
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-146a-3p

• Accession: MIMAT0026938
• Description: Monodelphis domestica mdo-miR-146a-3p mature miRNA
• Sequence: 51 - CCUAUGAAACUCAGUUCUUCAG - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45