Stem-loop mdo-mir-153-1

Accession

MI0012505

Description

Monodelphis domestica mdo-mir-153-1 precursor miRNA

Sequence

12331 reads, 182 reads per million, 5 experiments

cucacagcugccagugUCAUUUUUGUGAUCUGCAGCUaguauucuggcuucagUUGCAUAGUCACAAAAGUGAUCauuggcagguguggc
.(((((.((((((((((((((((((((((.((((((((((......)))..)))))))..))))))))))))).))))))))).))))).

Structure

c     g         -             -C       --   au 
 ucaca cugccagug UCAUUUUUGUGAU  UGCAGCU  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  ucg  c
c     g         U             AU       cu   gu 

Annotation confidence Low

Genome context

chr7: 173335344-173335433 [+]

Mature mdo-miR-153-3p

• Accession: MIMAT0012738
• Description: Monodelphis domestica mdo-miR-153-3p mature miRNA
• Sequence: 54 - UUGCAUAGUCACAAAAGUGAUC - 75
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-153-1-5p

• Accession: MIMAT0031108
• Description: Monodelphis domestica mdo-miR-153-1-5p mature miRNA
• Sequence: 17 - UCAUUUUUGUGAUCUGCAGCU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45