Stem-loop mdo-mir-210

Accession

MI0012507

Description

Monodelphis domestica mdo-mir-210 precursor miRNA

Sequence

897 reads, 16 reads per million, 5 experiments

ccggccgcaggggAGCCACUGACUAACGCACAUUGcgcucaggacccACUGUGCGUGUGACAGCGGCUaccgugcaaccggc
((((..(((.((.((((.(((.(..(((((((.((.((....).).)).)))))))..).))).)))).)).)))..)))).

Structure

-    cc   g  g    A   A UA       U  c - u 
 ccgg  gca gg AGCC CUG C  ACGCACA UG g c c
 ||||  ||| || |||| ||| |  ||||||| || | |  
 ggcc  cgu cc UCGG GAC G  UGCGUGU Ac c g a
c    aa   g  a    C   A UG       C  c a g 

Annotation confidence Medium

Genome context

NW_001584700.1: 16418-16499 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-210

Mature mdo-miR-210-3p

• Accession: MIMAT0012750
• Description: Monodelphis domestica mdo-miR-210-3p mature miRNA
• Sequence: 48 - ACUGUGCGUGUGACAGCGGCU - 68
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-210-5p

• Accession: MIMAT0026941
• Description: Monodelphis domestica mdo-miR-210-5p mature miRNA
• Sequence: 14 - AGCCACUGACUAACGCACAUUG - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45