Stem-loop mdo-mir-33

Accession

MI0012511

Description

Monodelphis domestica mdo-mir-33 precursor miRNA

Sequence

1100 reads, 17 reads per million, 5 experiments

gGUGCAUUGUAGUUGCAUUGCAcgucguguccgggccgugcAAUGUUUCCACAGUGCAUCCcagaggc
((((((((((.(..((((((((((((.......)).))))))))))..).))))))))))........

Structure

--------          A UU          -  gu 
        gGUGCAUUGU G  GCAUUGCAcg uc  g
        |||||||||| |  |||||||||| ||  u
        CUACGUGACA C  UGUAAcgugc gg  c
cggagacC          C UU          c  gc 

Annotation confidence Medium

Genome context

NW_001583721.1: 291985-292052 [+]

Mature mdo-miR-33-5p

• Accession: MIMAT0012754
• Description: Monodelphis domestica mdo-miR-33-5p mature miRNA
• Sequence: 2 - GUGCAUUGUAGUUGCAUUGCA - 22
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-33-3p

• Accession: MIMAT0026944
• Description: Monodelphis domestica mdo-miR-33-3p mature miRNA
• Sequence: 42 - AAUGUUUCCACAGUGCAUCC - 61
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45