Stem-loop mdo-mir-497

Accession

MI0012519

Description

Monodelphis domestica mdo-mir-497 precursor miRNA

Sequence

4193 reads, 98.0 reads per million, 5 experiments

ccugccuccgcccCAGCAGCACACUGUGGUUUGUUcaguguuauggccaaguCCAAACCACACUGUGGUGUUAGAgcgagggua
..(((((.(((.(.((((.((((.(((((((((..(.((......))...)..))))))))).)))).)))).).))).)))))

Structure

cc     c   c C    G    C         UU --a  gu 
  ugccu cgc c AGCA CACA UGUGGUUUG  c   gu  u
  ||||| ||| | |||| |||| |||||||||  |   ||   
  auggg gcg G UUGU GUGU ACACCAAAC  g   cg  a
--     a   A A    G    C         Cu aac  gu 

Annotation confidence High

Genome context

ref|NC_077228.1|: 259513266-259513349 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-497

Mature mdo-miR-497-5p

• Accession: MIMAT0012762
• Description: Monodelphis domestica mdo-miR-497-5p mature miRNA
• Sequence: 14 - CAGCAGCACACUGUGGUUUGUU - 35
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-497-3p

• Accession: MIMAT0026946
• Description: Monodelphis domestica mdo-miR-497-3p mature miRNA
• Sequence: 53 - CCAAACCACACUGUGGUGUUAGA - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45