Stem-loop mdo-mir-551b

Accession

MI0012521

Description

Monodelphis domestica mdo-mir-551b precursor miRNA

Sequence

584 reads, 21 reads per million, 2 experiments

ccccaGAAAUCAAGGAUGGGUGAGACCUcgugugcaaacugaaagGCGACCCAUACUUGGUUUCAGgggcu
((((.(((((((((..(((((..(.(((...((....))....)))).)))))..))))))))).))))..

Structure

--    a         GA     GA A   -cgu  g 
  cccc GAAAUCAAG  UGGGU  G CCU    gu c
  |||| |||||||||  |||||  | |||    ||  
  gggG CUUUGGUUC  ACCCA  C Gga    ca a
uc    A         AU     -G -   aagu  a 

Annotation confidence Low

Genome context

chr7: 234027689-234027759 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-551b

Mature mdo-miR-551b-3p

• Accession: MIMAT0012764
• Description: Monodelphis domestica mdo-miR-551b-3p mature miRNA
• Sequence: 46 - GCGACCCAUACUUGGUUUCAG - 66
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-551b-5p

• Accession: MIMAT0026947
• Description: Monodelphis domestica mdo-miR-551b-5p mature miRNA
• Sequence: 6 - GAAAUCAAGGAUGGGUGAGACCU - 28
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45