Stem-loop mdo-mir-599

Accession

MI0012522

Description

Monodelphis domestica mdo-mir-599 precursor miRNA

Sequence

496 reads, 22 reads per million, 5 experiments

cuguccagagugugUUUGAUAAUCUGACAUGGGACAGagguucuuuucacuGUUGUGUCAGUUUAUCAAACccauaccuggau
..((((((.(((((((((((((.(((((((..(((((.((......)).)))))))))))).)))))))))..))))))))))

Structure

cu      a    --         U       GG     a  uu 
  guccag gugu  gUUUGAUAA CUGACAU  GACAG gg  c
  |||||| ||||  ||||||||| |||||||  ||||| ||   
  uagguc caua  CAAACUAUU GACUGUG  UUGuc cu  u
--      -    cc         U       --     a  uu 

Annotation confidence Not enough data

Genome context

chr3: 364601260-364601342 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-599

Mature mdo-miR-599-3p

• Accession: MIMAT0012765
• Description: Monodelphis domestica mdo-miR-599-3p mature miRNA
• Sequence: 52 - GUUGUGUCAGUUUAUCAAAC - 71
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-599-5p

• Accession: MIMAT0026948
• Description: Monodelphis domestica mdo-miR-599-5p mature miRNA
• Sequence: 15 - UUUGAUAAUCUGACAUGGGACAG - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45