Stem-loop mml-mir-541

Accession

MI0012541

Description

Macaca mulatta mml-mir-541 precursor miRNA

Sequence

1617 reads, 11 reads per million, 8 experiments

acgucagggAAAGGAUUCUGCUGUCGGUCCCACUccaaagugcauagaaugggUGGUGGGCACAGAAUCCGGACUcugcuugug
(((.(((((...((((((((.((((.(..((((.(((............)))))))).))))))))))))...)))))..))).

Structure

-   -u     AAA        C    G UC    U   aagug 
 acg  caggg   GGAUUCUG UGUC G  CCAC cca     c
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     AGG        -    G --    -   aagau 

Annotation confidence Medium

Genome context

chr7: 163398288-163398371 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from mml-mir-541

Mature mml-miR-541-5p

• Accession: MIMAT0012784
• Description: Macaca mulatta mml-miR-541-5p mature miRNA
• Sequence: 10 - AAAGGAUUCUGCUGUCGGUCCCACU - 34
• Evidence: experimental ; Illumina [2]

Mature mml-miR-541-3p

• Accession: MIMAT0026951
• Description: Macaca mulatta mml-miR-541-3p mature miRNA
• Sequence: 54 - UGGUGGGCACAGAAUCCGGACU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45