Stem-loop oan-mir-182

Accession

MI0012558

Description

Ornithorhynchus anatinus oan-mir-182 precursor miRNA

Sequence

6650 reads, 90 reads per million, 5 experiments

cccuccugcugugUUUGGCAAUGGUAGAACUCACAcuggugagguaaugggauccgguGGUUCUAGACUUGCCAACUAuggcccgagggcucagccggca
(((((..((((((.(((((((...((((((...((((((..............))))))))))))...))))))).))))))..)))))...........

Structure

-----------     cu      U       UGG      UCA      ugaggu 
           cccuc  gcugug UUGGCAA   UAGAAC   CAcugg      a
           |||||  |||||| |||||||   ||||||   ||||||       
           gggag  cgguAU AACCGUU   AUCUUG   Guggcc      a
acggccgacuc     cc      C       CAG      ---      uagggu 

Annotation confidence Low

Genome context

10: 4559452-4559551 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-182

Mature oan-miR-182-5p

• Accession: MIMAT0012798
• Description: Ornithorhynchus anatinus oan-miR-182-5p mature miRNA
• Sequence: 14 - UUUGGCAAUGGUAGAACUCACA - 35
• Evidence: experimental ; Illumina [2]

Mature oan-miR-182-3p

• Accession: MIMAT0026955
• Description: Ornithorhynchus anatinus oan-miR-182-3p mature miRNA
• Sequence: 59 - GGUUCUAGACUUGCCAACUA - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45