Stem-loop ptr-mir-299

Accession

MI0012563

Description

Pan troglodytes ptr-mir-299 precursor miRNA

Literature search

4 open access papers mention ptr-mir-299
(42 sentences)

Sequence

2043 reads, 18.0 reads per million, 24 experiments

aagaaaUGGUUUACCGUCCCACAUACAUUuugaauaugUAUGUGGGACGGUAAACCGCUUcuugguauc
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))......

Structure

------     a                      Uu 
      aagaa UGGUUUACCGUCCCACAUACAU  u
      ||||| ||||||||||||||||||||||  g
      uucUU GCCAAAUGGCAGGGUGUAUgua  a
cuaugg     C                      ua 

Annotation confidence High

Genome context

chr14: 86272294-86272362 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ptr-mir-299

Mature ptr-miR-299-5p

• Accession: MIMAT0012801
• Description: Pan troglodytes ptr-miR-299-5p mature miRNA
• Sequence: 7 - UGGUUUACCGUCCCACAUACAUU - 29
• Evidence: not_experimental

Mature ptr-miR-299-3p

• Accession: MIMAT0052413
• Description: Pan troglodytes ptr-miR-299-3p mature miRNA
• Sequence: 39 - UAUGUGGGACGGUAAACCGCUU - 60
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39