Stem-loop rno-mir-1224

Accession

MI0012589

Description

Rattus norvegicus rno-mir-1224 precursor miRNA

Literature search

6 open access papers mention rno-mir-1224
(20 sentences)

Sequence

12929 reads, 55 reads per million, 214 experiments

GUGAGGACUGGGGAGGUGGAGgguaguaccauuagagccagagcucugucucagcucccucuccccccaccucuucucuccucag
.((((((..((((((((((((((.(((.....((((((....)))))).....)))))))......))))))))))..)))))).

Structure

G      CU          ------    u   accau      c 
 UGAGGA  GGGGAGGUGG      AGgg agu     uagagc a
 ||||||  ||||||||||      |||| |||     ||||||  
 acuccu  cuucuccacc      uccc ucg     gucucg g
g      cu          ccccuc    -   acucu      a 

Annotation confidence High

Genome context

chr11: 83992628-83992712 [-]

Mature rno-miR-1224

• Accession: MIMAT0012827
• Description: Rattus norvegicus rno-miR-1224 mature miRNA
• Sequence: 1 - GUGAGGACUGGGGAGGUGGAG - 21
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39