Stem-loop rno-mir-1224

Accession

MI0012589

Description

Rattus norvegicus rno-mir-1224 precursor miRNA

Literature search

27 open access papers mention rno-mir-1224
(65 sentences)

Sequence

25241 reads, 54.0 reads per million, 271 experiments

GUGAGGACUGGGGAGGUGGAGGGUaguaccauuagagccagagcucugucucagcucccucuccCCCCACCUCUUCUCUCCUCAG
.((((((..((((((((((((((.(((.....((((((....)))))).....)))))))......))))))))))..)))))).

Structure

G      CU          ------    U   accau      c 
 UGAGGA  GGGGAGGUGG      AGGG agu     uagagc a
 ||||||  ||||||||||      |||| |||     ||||||  
 ACUCCU  CUUCUCCACC      uccc ucg     gucucg g
G      CU          CCccuc    -   acucu      a 

Annotation confidence Medium

Genome context

chr11: 83992628-83992712 [-]

Mature rno-miR-1224-5p

• Accession: MIMAT0012827
• Description: Rattus norvegicus rno-miR-1224-5p mature miRNA
• Sequence: 1 - GUGAGGACUGGGGAGGUGGAGGGU - 24
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-1224-3p

• Accession: MIMAT0061425
• Description: Rattus norvegicus rno-miR-1224-3p mature miRNA
• Sequence: 65 - CCCCACCUCUUCUCUCCUCAG - 85
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39