Stem-loop rno-mir-362

Accession

MI0012590

Description

Rattus norvegicus rno-mir-362 precursor miRNA

Literature search

4 open access papers mention rno-mir-362
(4 sentences)

Sequence

8045 reads, 8 reads per million, 470 experiments

cucgAAUCCUUGGAACCUAGGUGUGAAUgcugcuucagugcAACACACCUGUUCAAGGAUUCAaa
...(((((((((((...((((((((..(((.........))).)))))))))))))))))))...

Structure

cuc           ACC        AA   ugc 
   gAAUCCUUGGA   UAGGUGUG  Ugc   u
   |||||||||||   ||||||||  |||   u
   CUUAGGAACUU   GUCCACAC  Acg   c
aaA           ---        -A   uga 

Annotation confidence High

Genome context

chrX: 16117170-16117234 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-362

Mature rno-miR-362-5p

• Accession: MIMAT0012828
• Description: Rattus norvegicus rno-miR-362-5p mature miRNA
• Sequence: 5 - AAUCCUUGGAACCUAGGUGUGAAU - 28
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-362-3p

• Accession: MIMAT0017357
• Description: Rattus norvegicus rno-miR-362-3p mature miRNA
• Sequence: 42 - AACACACCUGUUCAAGGAUUCA - 63
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39