Stem-loop rno-mir-544

Accession

MI0012593

Description

Rattus norvegicus rno-mir-544 precursor miRNA

Sequence

251 reads, 10 reads per million, 87 experiments

caccuagggauCUUGUUAAAAAGCAGAUUCUgauugagggaccaagAUUCUGCAUUUUUAGCAAGCUcucaagugaug
(((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..)))...

Structure

---   cua    u           -     U   gauug 
   cac   ggga CUUGUUAAAAA GCAGA UCU     a
   |||   |||| ||||||||||| ||||| |||     g
   gug   cucU GAACGAUUUUU CGUCU Aga     g
gua   -aa    C           A     U   accag 

Annotation confidence High

Genome context

chr6: 133879169-133879246 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-544

Mature rno-miR-544-5p

• Accession: MIMAT0017359
• Description: Rattus norvegicus rno-miR-544-5p mature miRNA
• Sequence: 12 - CUUGUUAAAAAGCAGAUUCU - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-544-3p

• Accession: MIMAT0012831
• Description: Rattus norvegicus rno-miR-544-3p mature miRNA
• Sequence: 47 - AUUCUGCAUUUUUAGCAAGCU - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39