Stem-loop rno-mir-582

Accession

MI0012595

Description

Rattus norvegicus rno-mir-582 precursor miRNA

Literature search

5 open access papers mention rno-mir-582
(5 sentences)

Sequence

160237 reads, 185 reads per million, 487 experiments

acucuuuggaUACAGUUGUUCAACCAGUUACUaaucuaacuaauuguAACCUGUUGAACAACUGAACCCaaagggugcaaa
(((((((((...((((((((((((..(((((..............)))))..))))))))))))...))))))))).....

Structure

-----         aUA            CA     Uaaucu 
     acucuuugg   CAGUUGUUCAAC  GUUAC      a
     |||||||||   ||||||||||||  |||||       
     ugggaaaCC   GUCAACAAGUUG  CAAug      a
aaacg         CAA            UC     uuaauc 

Annotation confidence High

Genome context

chr2: 40863750-40863830 [+]

Mature rno-miR-582-5p

• Accession: MIMAT0012833
• Description: Rattus norvegicus rno-miR-582-5p mature miRNA
• Sequence: 11 - UACAGUUGUUCAACCAGUUACU - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-582-3p

• Accession: MIMAT0017360
• Description: Rattus norvegicus rno-miR-582-3p mature miRNA
• Sequence: 48 - AACCUGUUGAACAACUGAACCC - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39