Stem-loop rno-mir-201

Accession

MI0012608

Description

Rattus norvegicus rno-mir-201 precursor miRNA

Literature search

3 open access papers mention rno-mir-201
(5 sentences)

Sequence

34572 reads, 176 reads per million, 377 experiments

guacaguaccuCACUCAGUAAGGCAUUGUUCuucuauacuaauaaaUGAACAGCGCCUUUCUGUGUAGcguaaugugcaa
(((((.(((((.((.(((.(((((.((((((...(((....)))...)))))).))))).))).)))).))).)))))..

Structure

--     g   -  C  U   U     A      uuc   a 
  guaca uac cu AC CAG AAGGC UUGUUC   uau c
  ||||| ||| || || ||| ||||| ||||||   |||  
  cgugu aug GA UG GUC UUCCG GACAAG   aua u
aa     a   c  -  U   U     C      Uaa   a 

Annotation confidence Medium

Genome context

chrX: 155339140-155339219 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-201

Mature rno-miR-201-5p

• Accession: MIMAT0012846
• Description: Rattus norvegicus rno-miR-201-5p mature miRNA
• Sequence: 12 - CACUCAGUAAGGCAUUGUUC - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-201-3p

• Accession: MIMAT0017364
• Description: Rattus norvegicus rno-miR-201-3p mature miRNA
• Sequence: 47 - UGAACAGCGCCUUUCUGUGUAG - 68
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39