Stem-loop rno-mir-294

Accession

MI0012610

Description

Rattus norvegicus rno-mir-294 precursor miRNA

Literature search

32 open access papers mention rno-mir-294
(117 sentences)

Sequence

376 reads, 3.0 reads per million, 73 experiments

auagccauGCUCAAAAUGGAGGCCCUAUCUaagcuuuuaaguagAAAGUGCUUCCAUUUUGUGUGUUGcug
.((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))).)))).))))

Structure

a    c    U            C  A   aa   u 
 uagc auGC CAAAAUGGAGGC CU UCU  gcu u
 |||| |||| |||||||||||| || |||  |||  
 gucG UGUG GUUUUACCUUCG GA Aga  uga u
-    U    U            U  A   --   a 

Annotation confidence High

Genome context

chr1: 64536746-64536816 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-294

Mature rno-miR-294-5p

• Accession: MIMAT0012848
• Description: Rattus norvegicus rno-miR-294-5p mature miRNA
• Sequence: 9 - GCUCAAAAUGGAGGCCCUAUCU - 30
• Evidence: not_experimental

Mature rno-miR-294-3p

• Accession: MIMAT0061620
• Description: Rattus norvegicus rno-miR-294-3p mature miRNA
• Sequence: 45 - AAAGUGCUUCCAUUUUGUGUGUUG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39