Stem-loop rno-mir-764

Accession

MI0012616

Description

Rattus norvegicus rno-mir-764 precursor miRNA

Literature search

3 open access papers mention rno-mir-764
(10 sentences)

Sequence

8507 reads, 25 reads per million, 111 experiments

ucaacacaaucaaaaucucggaggcaGGUGCUCACAUGUCCUCCUCCAugccuacacauacaugGAGGAGGCCAUAGUGGCAACUGUcaccaugauugauuucguugg
.((((..(((((..(((..((.(((((.(((.((((((.(((((((((((..........))))))))))).))).)))))).))))).))..))))))))..)))).

Structure

u    ac     aa   uc  a     G   U   -   U           ccua 
 caac  aauca  auc  gg ggcaG UGC CAC AUG CCUCCUCCAug    c
 ||||  |||||  |||  || ||||| ||| ||| ||| |||||||||||     
 guug  uuagu  uag  cc cUGUC ACG GUG UAC GGAGGAGguac    a
g    cu     --   ua  a     A   -   A   C           auac 

Annotation confidence High

Genome context

chrX: 118123251-118123358 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-764

Mature rno-miR-764-5p

• Accession: MIMAT0012854
• Description: Rattus norvegicus rno-miR-764-5p mature miRNA
• Sequence: 27 - GGUGCUCACAUGUCCUCCUCCA - 48
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-764-3p

• Accession: MIMAT0017370
• Description: Rattus norvegicus rno-miR-764-3p mature miRNA
• Sequence: 65 - GAGGAGGCCAUAGUGGCAACUGU - 87
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39