Stem-loop eca-mir-1296

Accession

MI0012647

Description

Equus caballus eca-mir-1296 precursor miRNA

Sequence

43 reads, 7 reads per million, 1 experiments

accuaccuaacugggUUAGGGCCCUGGCUCCAUCUCCuuuaggaaaaccuucuuuggggaguggggcuucgacccuaacccagcugggcugu
.....((((.(((((((((((....(((((((.((((((.(((((....))))).)))))))))))))....))))))))))).))))....

Structure

accua    a           CCCU       U      u     a 
     ccua cugggUUAGGG    GGCUCCA CUCCuu aggaa a
     |||| |||||||||||    ||||||| |||||| |||||  
     gggu gacccaauccc    ucggggu gagggg uucuu c
-uguc    c           agcu       -      u     c 

Annotation confidence Not enough data

Genome context

chr1: 52479453-52479544 [-]

Mature eca-miR-1296

• Accession: MIMAT0012890
• Description: Equus caballus eca-miR-1296 mature miRNA
• Sequence: 16 - UUAGGGCCCUGGCUCCAUCUCC - 37
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131