Stem-loop eca-mir-146b

Accession

MI0012648

Description

Equus caballus eca-mir-146b precursor miRNA

Literature search

4 open access papers mention eca-mir-146b
(32 sentences)

Sequence

27339 reads, 4138 reads per million, 1 experiments

ccuggcucUGAGAACUGAAUUCCAUAGGCUgugagcuccagcaaaUGCCCUAGGGACUCAGUUCUGGugcccgg
((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).))

Structure

  u   u  G        A    A    C   ga  u 
cc ggc cU AGAACUGA UUCC UAGG Ugu  gc c
|| ||| || |||||||| |||| |||| |||  ||  
gg ccg GG UCUUGACU AGGG AUCC GUa  cg c
  c   u  -        C    -    C   aa  a 

Annotation confidence Not enough data

Genome context

chr1: 27716546-27716619 [-]

Mature eca-miR-146b-5p

• Accession: MIMAT0012891
• Description: Equus caballus eca-miR-146b-5p mature miRNA
• Sequence: 9 - UGAGAACUGAAUUCCAUAGGCU - 30
• Evidence: not_experimental

Mature eca-miR-146b-3p

• Accession: MIMAT0012892
• Description: Equus caballus eca-miR-146b-3p mature miRNA
• Sequence: 46 - UGCCCUAGGGACUCAGUUCUGG - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131