Stem-loop eca-mir-1839

Accession

MI0012649

Description

Equus caballus eca-mir-1839 precursor miRNA

Sequence

184011 reads, 266.0 reads per million, 181 experiments

AAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauucaAGACCUACUUAUCUACCAACA
..(((((((((...((((((((..(.........)..))))))))..)))))))))....

Structure

--AA         AAC        uu gca 
    GGUAGAUAG   AGGUCUUG  u   a
    |||||||||   ||||||||  |   a
    CCAUCUAUU   UCCAGAac  a   a
ACAA         -CA        uu aau 

Annotation confidence High

Genome context

1: 92777727-92777786 [-]

Mature eca-miR-1839-5p

• Accession: MIMAT0012893
• Description: Equus caballus eca-miR-1839-5p mature miRNA
• Sequence: 1 - AAGGUAGAUAGAACAGGUCUUG - 22
• Evidence: not_experimental

Mature eca-miR-1839-3p

• Accession: MIMAT0051314
• Description: Equus caballus eca-miR-1839-3p mature miRNA
• Sequence: 40 - AGACCUACUUAUCUACCAACA - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131