Stem-loop eca-mir-208b

Accession

MI0012656

Description

Equus caballus eca-mir-208b precursor miRNA

Literature search

9 open access papers mention eca-mir-208b
(17 sentences)

Sequence

67819 reads, 747.0 reads per million, 86 experiments

ccucucagggAAGCUUUUUGCUCGCGUUAUGUUucucauccgaauAUAAGACGAACAAAAGGUUUGUcugagggcag
.((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).))))))))...

Structure

--c        g          C   CG        cu 
   cucucagg AAGCUUUUUG UCG  UUAUGUUu  c
   |||||||| |||||||||| |||  ||||||||  a
   gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gac        G          A   AG        cc 

Annotation confidence High

Genome context

1: 163306871-163306947 [-]

Mature eca-miR-208b-5p

• Accession: MIMAT0051317
• Description: Equus caballus eca-miR-208b-5p mature miRNA
• Sequence: 11 - AAGCUUUUUGCUCGCGUUAUGUU - 33
• Evidence: not_experimental

Mature eca-miR-208b-3p

• Accession: MIMAT0012900
• Description: Equus caballus eca-miR-208b-3p mature miRNA
• Sequence: 46 - AUAAGACGAACAAAAGGUUUGU - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131