Stem-loop eca-mir-346

Accession

MI0012658

Description

Equus caballus eca-mir-346 precursor miRNA

Literature search

1 open access papers mention eca-mir-346
(1 sentences)

Sequence

874 reads, 102.0 reads per million, 65 experiments

ggucucuguguugggcgucUGUCUGCCCGCAUGCCUGCCUCUcuguugcucugaaggaggcaggggcugggccugcagcugccugggcagagcgg
.(.((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).)))))))..

Structure

-g u      gu      u    CU    -  AUG        U  guug 
  g cucugu  ugggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | ||||||  |||||| ||||  |||| ||   |||||||| ||     
  c gagacg  guccgu gacg  cggg cg   ggacggag ga    u
gg -      -g      c    uc    u  --g        -  aguc 

Annotation confidence Not enough data

Genome context

1: 84971760-84971854 [+]

Mature eca-miR-346-5p

• Accession: MIMAT0012902
• Description: Equus caballus eca-miR-346-5p mature miRNA
• Sequence: 20 - UGUCUGCCCGCAUGCCUGCCUCU - 42
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131