Stem-loop eca-mir-7-1

Accession

MI0012661

Description

Equus caballus eca-mir-7-1 precursor miRNA

Literature search

1 open access papers mention eca-mir-7-1
(4 sentences)

Sequence

241790 reads, 658.0 reads per million, 179 experiments

UGGAAGACUAGUGAUUUUGUUGUUgucuugcugcgcccaaCAACAAGUCCCAGUCUGCCG
.((.(((((.(.(((((.(((((((............))))))))))))).))))).)).

Structure

U  A     A U     U       ucuug 
 GG AGACU G GAUUU GUUGUUg     c
 || ||||| | ||||| |||||||      
 CC UCUGA C CUGAA CAACaac     u
G  G     C -     -       ccgcg 

Annotation confidence High

Genome context

1: 95487869-95487928 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-7-1

Mature eca-miR-7-5p

• Accession: MIMAT0012905
• Description: Equus caballus eca-miR-7-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGUU - 24
• Evidence: experimental

Mature eca-miR-7-1-3p

• Accession: MIMAT0051367
• Description: Equus caballus eca-miR-7-1-3p mature miRNA
• Sequence: 41 - CAACAAGUCCCAGUCUGCCG - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131