Stem-loop eca-mir-302b

Accession

MI0012668

Description

Equus caballus eca-mir-302b precursor miRNA

Literature search

4 open access papers mention eca-mir-302b
(4 sentences)

Sequence

8620 reads, 4189.0 reads per million, 81 experiments

acucucuuuAACUUUAACAUGGACGUGCUUUcugugacuugcaaaauagUAAGUGCUUCCAUGUUUUAGUAGaagu
.....((((.(((..((((((((.((((((.((((..........)))).)))))).))))))))..))).)))).

Structure

acucu    A   UU        C      U    gacu 
     cuuu ACU  AACAUGGA GUGCUU cugu    u
     |||| |||  |||||||| |||||| ||||     
     gaaG UGA  UUGUACCU CGUGAA gaua    g
----u    A   UU        U      U    aaac 

Annotation confidence High

Genome context

2: 114120437-114120512 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-302b

Mature eca-miR-302b-5p

• Accession: MIMAT0051324
• Description: Equus caballus eca-miR-302b-5p mature miRNA
• Sequence: 10 - AACUUUAACAUGGACGUGCUUU - 31
• Evidence: not_experimental

Mature eca-miR-302b-3p

• Accession: MIMAT0012912
• Description: Equus caballus eca-miR-302b-3p mature miRNA
• Sequence: 50 - UAAGUGCUUCCAUGUUUUAGUAG - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131