Stem-loop eca-mir-302c

Accession

MI0012669

Description

Equus caballus eca-mir-302c precursor miRNA

Literature search

4 open access papers mention eca-mir-302c
(5 sentences)

Sequence

1889 reads, 650.0 reads per million, 58 experiments

ccuuuGCUUUAACAUGGGGGUACCUGcuguguaaagcaaaagUAAGUGCUUCCAUGUUUCAGUGGagg
((((((((..(((((((((((((.((((.(((...)))..)))).)))))))))))))..))))))))

Structure

        UU             C    -g   a 
ccuuuGCU  AACAUGGGGGUAC UGcu  ugu  
||||||||  ||||||||||||| ||||  ||| a
ggaGGUGA  UUGUACCUUCGUG AUga  acg  
        CU             A    aa   a 

Annotation confidence High

Genome context

2: 114120575-114120642 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-302c

Mature eca-miR-302c-5p

• Accession: MIMAT0051325
• Description: Equus caballus eca-miR-302c-5p mature miRNA
• Sequence: 6 - GCUUUAACAUGGGGGUACCUG - 26
• Evidence: not_experimental

Mature eca-miR-302c-3p

• Accession: MIMAT0012913
• Description: Equus caballus eca-miR-302c-3p mature miRNA
• Sequence: 43 - UAAGUGCUUCCAUGUUUCAGUGG - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131