Stem-loop eca-mir-302d

Accession

MI0012670

Description

Equus caballus eca-mir-302d precursor miRNA

Literature search

3 open access papers mention eca-mir-302d
(4 sentences)

Sequence

7357 reads, 4542.0 reads per million, 69 experiments

ccucuACUUUAACAUGGAGGCACUUGCUgugacuugagaaaaaUAAGUGCUUCCAUGUUUUAGUGUgg
((..((((..((((((((((((((((((........)).....))))))))))))))))..)))).))

Structure

  uc    UU                -----  gug 
cc  uACU  AACAUGGAGGCACUUG     CU   a
||  ||||  ||||||||||||||||     ||    
gg  GUGA  UUGUACCUUCGUGAAU     ga   c
  -U    UU                aaaaa  guu 

Annotation confidence High

Genome context

2: 114120907-114120974 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-302d

Mature eca-miR-302d-5p

• Accession: MIMAT0051326
• Description: Equus caballus eca-miR-302d-5p mature miRNA
• Sequence: 6 - ACUUUAACAUGGAGGCACUUGCU - 28
• Evidence: not_experimental

Mature eca-miR-302d-3p

• Accession: MIMAT0012914
• Description: Equus caballus eca-miR-302d-3p mature miRNA
• Sequence: 44 - UAAGUGCUUCCAUGUUUUAGUGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131