Stem-loop eca-mir-30c-1

Accession

MI0012671

Description

Equus caballus eca-mir-30c-1 precursor miRNA

Literature search

14 open access papers mention eca-mir-30c-1
(25 sentences)

Sequence

4623411 reads, 5622.0 reads per million, 239 experiments

accaugcuguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCCUucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure

a     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
a     --    uUC U       U   --A         ----   a 

Annotation confidence High

Genome context

2: 17480015-17480103 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30c-1

Mature eca-miR-30c-5p

• Accession: MIMAT0012915
• Description: Equus caballus eca-miR-30c-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCUCAGCU - 40
• Evidence: not_experimental

Mature eca-miR-30c-3p

• Accession: MIMAT0061085
• Description: Equus caballus eca-miR-30c-3p mature miRNA
• Sequence: 56 - CUGGGAGAGGGUUGUUUACUCCU - 78
• Evidence: experimental ; unknown

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131