Stem-loop eca-mir-30e

Accession

MI0012672

Description

Equus caballus eca-mir-30e precursor miRNA

Literature search

6 open access papers mention eca-mir-30e
(12 sentences)

Sequence

7504141 reads, 7479.0 reads per million, 239 experiments

gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaagguguucagaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure

g        uu   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga g   c u
a        --   C            --           g aga u 

Annotation confidence High

Genome context

2: 17482937-17483028 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30e

Mature eca-miR-30e-5p

• Accession: MIMAT0012916
• Description: Equus caballus eca-miR-30e-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAGCU - 40
• Evidence: not_experimental

Mature eca-miR-30e-3p

• Accession: MIMAT0061086
• Description: Equus caballus eca-miR-30e-3p mature miRNA
• Sequence: 59 - CUUUCAGUCGGAUGUUUACAGC - 80
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131