Stem-loop eca-mir-34a

Accession

MI0012673

Description

Equus caballus eca-mir-34a precursor miRNA

Literature search

38 open access papers mention eca-mir-34a
(168 sentences)

Sequence

122255 reads, 189.0 reads per million, 170 experiments

UGGCAGUGUCUUAGCUGGUUGUUGugaguaauagugcgggaagCAAUCAGCAAGUAUACUGCC
.(((((((((((.((((((((((....(((....)))....))))))))))))).))))))))

Structure

U        -   A          Guga   a 
 GGCAGUGU CUU GCUGGUUGUU    gua u
 |||||||| ||| ||||||||||    |||  
 CCGUCAUA GAA CGACUAACga    cgu a
-        U   -          aggg   g 

Annotation confidence High

Genome context

2: 42156753-42156815 [+]

Mature eca-miR-34a-5p

• Accession: MIMAT0012917
• Description: Equus caballus eca-miR-34a-5p mature miRNA
• Sequence: 1 - UGGCAGUGUCUUAGCUGGUUGUUG - 24
• Evidence: not_experimental

Mature eca-miR-34a-3p

• Accession: MIMAT0051327
• Description: Equus caballus eca-miR-34a-3p mature miRNA
• Sequence: 44 - CAAUCAGCAAGUAUACUGCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131