Stem-loop eca-mir-551a

Accession

MI0012677

Description

Equus caballus eca-mir-551a precursor miRNA

Literature search

1 open access papers mention eca-mir-551a
(1 sentences)

Sequence

7167 reads, 17.0 reads per million, 125 experiments

ugGAAAUCCAGAGUGGGUGAGGCCUgucugaccauuucuagGCGACCCACUCUUGGUUUCCA
((((((((.(((((((((...(((((............))))).))))))))).))))))))

Structure

        C         GAG     ucuga 
ugGAAAUC AGAGUGGGU   GCCUg     c
|||||||| |||||||||   |||||      
ACCUUUGG UCUCACCCA   CGgau     c
        U         --G     cuuua 

Annotation confidence High

Genome context

2: 46757810-46757871 [+]

Mature eca-miR-551a-5p

• Accession: MIMAT0051328
• Description: Equus caballus eca-miR-551a-5p mature miRNA
• Sequence: 3 - GAAAUCCAGAGUGGGUGAGGCCU - 25
• Evidence: not_experimental

Mature eca-miR-551a-3p

• Accession: MIMAT0012921
• Description: Equus caballus eca-miR-551a-3p mature miRNA
• Sequence: 42 - GCGACCCACUCUUGGUUUCCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131