Stem-loop eca-mir-138a

Accession

MI0012681

Description

Equus caballus eca-mir-138a precursor miRNA

Literature search

1 open access papers mention eca-mir-138a
(2 sentences)

Sequence

98424 reads, 179.0 reads per million, 117 experiments

cguugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagugcauccucuuacccgGCUAUUUCACGACACCAGGGUUGcauca
.(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure

c u   u  AG             UCA     -ac   c  ug 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acG UG  GACCACAGCACUU   UCGgc   uuc uc  a
a u   U  -G             -UA     cca   -  cu 

Annotation confidence High

Genome context

3: 9900381-9900464 [+]

Mature eca-miR-138a-5p

• Accession: MIMAT0012925
• Description: Equus caballus eca-miR-138a-5p mature miRNA
• Sequence: 10 - AGCUGGUGUUGUGAAUCAGGCCG - 32
• Evidence: not_experimental

Mature eca-miR-138a-3p

• Accession: MIMAT0051329
• Description: Equus caballus eca-miR-138a-3p mature miRNA
• Sequence: 57 - GCUAUUUCACGACACCAGGGUUG - 79
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131